Repositories list

• breast_cancer

  Public
  Jupyter Notebook

  •00 forks•11 star•00 issues•11 pull request•Updated Jun 5, 2026Jun 5, 2026

• CRC_Flux_Sampling

  Public
  Scripts to generate results and figures for flux sampling manuscript

  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 11, 2025Dec 11, 2025

• tme-network-topology

  Public
  Scripts for tumor microenvironment metabolic network analysis: random flux sampling of genome-scale models and multifractal geometric topology of metabolic grap…

  network-analysismultifractal-analysismetabolic-models+ 1

  network-analysismultifractal-analysismetabolic-modelsgraph-topology

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 14, 2025Nov 14, 2025

• structure_informed_cell_signaling

  Public
  repository for publication

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 8, 2025Jul 8, 2025

• Boolean-TME-ABM

  Public
  Jupyter Notebook

  •11 fork•11 star•00 issues•00 pull requests•Updated Mar 14, 2025Mar 14, 2025

• CRC-Cell-uFBA-Modeling

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 27, 2025Jan 27, 2025

• CRC-Cell-Constraint-Based-Metabolic-Model

  Public
  MATLAB

  •33 forks•11 star•00 issues•00 pull requests•Updated May 23, 2024May 23, 2024

• Basophil-immune-model

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 1, 2024May 1, 2024

• Apoptosis-signaling-heterogeneity

  Public
  MATLAB

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 31, 2023Oct 31, 2023

• Early-TME-ABM-PLOS-Comp-Bio

  Public
  C++

  •55 forks•33 stars•11 issue•00 pull requests•Updated Oct 24, 2023Oct 24, 2023

• InfoTheory-NFkB

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 16, 2023Sep 16, 2023

• FluxSampling_MetabolicInteractions

  Public
  Flux Sampling in Microbial Metabolic Interactions

  MATLAB

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 21, 2023Jun 21, 2023

• Boolean_TCE_model

  Public
  R

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jun 20, 2023Jun 20, 2023

• M1_M2_MacrophageGEMs

  Public
  Genome-scale Metabolic Modeling of CRC-associated Macrophage subtypes

  MATLAB

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 30, 2023May 30, 2023

• Representation-learning-for-ABM-parameter-estimation

  Public
  C++

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 6, 2023Mar 6, 2023

• KL-Divergence-Bayesian-Hypothesis-Formation

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 8, 2022Sep 8, 2022

• CAR-T-Signaling-in-variability

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 13, 2022Jul 13, 2022

• CAR-41BB-NFkB-signaling

  Public
  This repository contains scripts, which were used to analyze CAR-4-1BB-induced canonical NFkB signaling and mutual information.

  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 13, 2022Jul 13, 2022

• Anti-angiogenic-treatment-ABM-model

  Public
  C++

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 29, 2021Nov 29, 2021

• Endothelial-cell-sprouting-model

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 4, 2021Nov 4, 2021

• PancreaticBetaCellMetabolism

  Public
  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 11, 2021Oct 11, 2021

• JAK-STAT-Regulation-CAMB

  Public
  Code repository for the manuscript: Dynamic Regulation of JAK-STAT Signaling Through the Prolactin Receptor Predicted by Computational Modeling

  MATLAB

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 11, 2020Aug 11, 2020